PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G35590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 461aa    MW: 50328.7 Da    PI: 5.5004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G35590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-08259283730
                   HHHHHHHHHHHHHHHHHHCTSCC.C CS
           HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                   ++ErrRR+r+N++++ Lr+++Pk +
  OB06G35590.1 259 MAERRRRKRLNDRLSMLRSVVPKiS 283
                   79********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.13E-6245285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5259283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-6259282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGGY PERHQATVSV LPTFTASYEQ  60
PQPPPPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPSP ASSEQPQPPP PPAGFDCLAE  180
VYGTAAAFGP NAGAGEYGGD LGFLDVVEPK ASMVVDGGLG VCKLEPGLAE GGGGGGFGAV  240
AAPPSKKKRV EGMPSKNLMA ERRRRKRLND RLSMLRSVVP KISKVANLLL LFFSFSSPEI  300
ASECEEEQVD GQDVDSWRHD RLHEGVAGED PAAAGGDRGA AAGDAGRAQR LQGAQPQRDA  360
GQEHTKVRGG AEGGRRHPGG DLLRGEARAA AVDGEHAGDA GPRHPPLRRQ LLQRLRHARL  420
LLRDAEGEDE RGHDKAGAVQ ERRLWRRMLV EEDSPAAAAI K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246266KKRVEGMPSKNLMAERRRRKR
2260267ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635230.0AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MHR51e-146J3MHR5_ORYBR; Uncharacterized protein
STRINGOB06G35590.11e-145(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.24e-11beta HLH protein 93